Class CramConverter

java.lang.Object
htsjdk.samtools.cram.CramConverter
public class CramConverter extends Object
Simple command-line tool for converting between SAM/BAM/CRAM formats, primarily for experimenting with CRAM 3.1 compression profiles.

Usage: 

  java -cp htsjdk.jar htsjdk.samtools.cram.CramConverter \
      input.bam output.cram --reference ref.fasta --profile archive

  • Constructor Details

    • CramConverter

      public CramConverter()

  • Method Details

    • main

      public static void main(String[] args)
      Entry point. Parses command-line arguments and performs the conversion.
      Parameters:
      args - command-line arguments (see USAGE for details)