htsjdk.samtools.cram.build.CramContainerIterator

All Implemented Interfaces:: Closeable, AutoCloseable, Iterator<Container>

Direct Known Subclasses:: CramContainerHeaderIterator, CramSpanContainerIterator

public class CramContainerIterator extends Object implements Iterator<Container>, Closeable

An iterator of CRAM containers read from an InputStream.

Constructor Details
- CramContainerIterator
  
  public CramContainerIterator(InputStream inputStream)
Method Details
- containerFromStream
  protected Container containerFromStream(CountingInputStream countingStream)
  
  Consume the entirety of the next container from the stream.
  
  Parameters:
  
  countingStream - the CountingInputStream to read from
  
  Returns:
  
  The next Container from the stream.
  
  See Also:
  
  containerFromStream(CountingInputStream)
- hasNext
  
  public boolean hasNext()
  
  Specified by:
  
  hasNext in interface Iterator<Container>
- next
  
  public Container next()
  
  Specified by:
  
  next in interface Iterator<Container>
- remove
  
  public void remove()
  
  Specified by:
  
  remove in interface Iterator<Container>
- getCramHeader
  
  public CramHeader getCramHeader()
- getSamFileHeader
  
  public SAMFileHeader getSamFileHeader()
- close
  
  public void close()
  
  Specified by:
  
  close in interface AutoCloseable
  
  Specified by:
  
  close in interface Closeable

Class CramContainerIterator

Constructor Summary