Class FQZGlobalFlags

java.lang.Object
htsjdk.samtools.cram.compression.fqzcomp.FQZGlobalFlags
public class FQZGlobalFlags extends Object
Global flags byte for the FQZComp codec, read from the first byte after the version number in the FQZComp parameter header. Controls whether multiple parameter blocks are present, whether a selector table maps records to parameter blocks, and whether quality scores should be reversed for reverse-complemented reads.

  • Field Details

  • Constructor Details

    • FQZGlobalFlags

      public FQZGlobalFlags(ByteBuffer inBuffer)

  • Method Details

    • isMultiParam

      public boolean isMultiParam()

    • hasSelectorTable

      public boolean hasSelectorTable()

    • doReverse

      public boolean doReverse()