htsjdk.samtools.cram.compression.fqzcomp.FQZModels

public class FQZModels extends Object

Adaptive arithmetic coding models used by FQZComp for encoding and decoding quality scores. Contains 65,536 quality models (one per possible 16-bit context), plus models for record length, reverse-complement flag, duplicate flag, and parameter selector.

See Also:

Constructor Summary

Constructors

Constructor

Description

FQZModels(FQZParams fqzParams)
Method Summary

Modifier and Type

Method

Description

ByteModel

getDuplicate()

ByteModel[]

getLength()

ByteModel[]

getQuality()

ByteModel

getReverse()

ByteModel

getSelector()

Methods inherited from class Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- FQZModels
  
  public FQZModels(FQZParams fqzParams)
Method Details
- getQuality
  
  public ByteModel[] getQuality()
- getLength
  
  public ByteModel[] getLength()
- getReverse
  
  public ByteModel getReverse()
- getDuplicate
  
  public ByteModel getDuplicate()
- getSelector
  
  public ByteModel getSelector()

Class FQZModels

Constructor Summary

Method Summary

Methods inherited from class Object

Constructor Details

FQZModels

Method Details

getQuality

getLength

getReverse

getDuplicate

getSelector