Class RANSNx16Decode

java.lang.Object
htsjdk.samtools.cram.compression.rans.RANSDecode
htsjdk.samtools.cram.compression.rans.RANSNx16Decode
public class RANSNx16Decode extends RANSDecode
Decoder for the CRAM 3.1 rANSNx16 codec. All internal operations use byte[] with explicit offset tracking for performance. The public API accepts and returns byte[].

  • Constructor Details

    • RANSNx16Decode

      public RANSNx16Decode()

  • Method Details

    • uncompress

      public byte[] uncompress(byte[] input)
      Uncompress a rANS Nx16 encoded byte stream. The format flags byte at the start of the stream determines which transformations (PACK, RLE, STRIPE, CAT) are applied, along with the order (0 or 1) and interleave width (4 or 32).
      Specified by:
      uncompress in class RANSDecode
      Parameters:
      input - the compressed byte stream
      Returns:
      the uncompressed data