Class FileExtensions
java.lang.Object
htsjdk.samtools.util.FileExtensions
Contains file extension constants for read, alignment, variant and annotation files
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Field Summary
FieldsModifier and TypeFieldDescriptionstatic final Stringstatic final Stringstatic final Stringstatic final Stringstatic final Stringstatic final Stringstatic final Stringstatic final Stringstatic final Stringstatic final Stringstatic final Stringstatic final Stringextensions for read files and related formats.static final Stringstatic final Stringstatic final Stringstatic final Stringstatic final Stringextensions for alignment files SAM, BAM, CRAM.static final Stringstatic final Stringstatic final Stringstatic final Stringextensions for VCF files and related formats.static final String -
Constructor Summary
Constructors -
Method Summary
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Field Details
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FASTA
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FASTA_INDEX
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SAM
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BAM
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BAI_INDEX
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CRAM
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CRAM_INDEX
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BED
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TABIX_INDEX
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TRIBBLE_INDEX
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VCF
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VCF_INDEX
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BCF
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COMPRESSED_VCF_BGZ
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COMPRESSED_VCF
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COMPRESSED_VCF_INDEX
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VCF_LIST
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INTERVAL_LIST
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COMPRESSED_INTERVAL_LIST
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DICT
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GZI
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SBI
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CSI
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MD5
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BLOCK_COMPRESSED
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GFF3
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Constructor Details
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FileExtensions
public FileExtensions()
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